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el0012 t4 rna ligation buffer new england biolabs  (New England Biolabs)


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    New England Biolabs el0012 t4 rna ligation buffer new england biolabs
    El0012 T4 Rna Ligation Buffer New England Biolabs, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 896 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t4+ligation+buffer/T4+RNA+Ligase+Reaction+Buffer/pm42013860-726-267-272
    Average 97 stars, based on 896 article reviews
    el0012 t4 rna ligation buffer new england biolabs - by Bioz Stars, 2026-09
    97/100 stars

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    Related Articles

    Ligation:

    Article Title: WAVE2 and REST/NRSF Regulate Clustered Gene Expression by Maintaining Heterochromatin Organization
    Article Snippet: Chromatin was digested with 8 μl of Dpn II (NEB, MA, USA) at 37°C overnight and inactivated at 65°C for 20 min with shaking at 900 rpm. .. The nuclei were pelleted (1,000 × g, 1 min) and proximity ligation was performed in 100 μl of T4 ligation buffer (NEB, MA, USA) containing 2 μl of T4 DNA ligase at 16°C for 24 h. Proteinase K was added for reverse crosslinking (65°C, 4 h), followed by DNA purification via phenol-chloroform extraction and ethanol precipitation. ..

    Article Title: Complementary constraints in germ and immune cells shape evolution of gene regulation and phenotype
    Article Snippet: Briefly, plasmid was digested with BsmBI-v2 (NEB, R0580) at 55°C for 1 hour. .. Digestion was separated on 1% agarose gel and band was extracted using QIAquick Gel Extraction Kit (28704, Qiagen) according to manufacturer instructions. sgRNA oligos were phosphorylated and annealed using T4 PNK (NEB, M0201S) and T4 Ligation Buffer (NEB, B0202S). .. Oligos were diluted 1:100 and ligated with digested lentiCRISPR v2 plasmid using T4 Ligase (NEB, M0202S) for 1 hour at room temperature.

    Article Title: CHAMP1 is an essential regulator for human myoblast fusion and muscle development
    Article Snippet: Samples were digested with 1 μl NlaIII (NEB, R0125L) at 37 °C for 1 h, purified with 0.9X SPRI beads (Beckman, B23319 ), and dissolved in 80 μl 10 mM Tris-HCl. .. DNA was diluted to 1 ng/μl and circularized in T4 ligation buffer with T4 DNA ligase (400 U/μl, NEB, M0202S) for ≥2 h at room temperature, then purified with DNA Clean & Concentrator kit (Zymo, D4013) and eluted in 16 μl H2O. .. For PmeI digestion and PCR, 14 μl DNA was incubated with 1.7 μl 10X CutSmart buffer and 1.3 μl PmeI at 37 °C for 1 h, followed by PCR with 16 μl 5X Q5 buffer, 1.6 μl 10 mM dNTPs, 1.6 μl Nextera-pcr-i7–10-L primer, 1.6 μl NEB primer i501 (both 10 μM), 0.8 μl Q5 polymerase (NEB, M0491L), and 58.4 μl H2O using the following program: 72 °C for 5 min, 98 °C for 30 s; then 11 cycles of 98 °C for 10 s, 59 °C for 30 s, 72 °C for 45 s; followed by 72 °C for 5 min and hold at 4 °C.

    Article Title: A critical signaling role for diacylglycerol in phagocytosis of M. tuberculosis
    Article Snippet: Digested plasmids were purified by gel electrophoresis and extraction with a Monarch gel extraction kit (New England Biolabs, product T1020). .. Complementary DNA oligonucleotides for the gRNA sequences were synthesized by Azenta and were annealed and phosphorylated using T4 PNK (New England Biolabs, product M0236S) and T4 ligation buffer (New England Biolabs, product B0202S) . .. The digested plasmid and annealed oligos were ligated overnight at room temperature in the presence of T4 ligase (New England Biolabs, product M0202S) and T4 ligation buffer.

    Article Title: ACTG1 facilitates proliferation and epithelial-mesenchymal transition-mediated metastasis via COL21A1 in gastric cancer
    Article Snippet: Quick Ligase , NEB , Cat#M2200S. .. T4 Ligation Buffer , NEB , Cat#B0202S. .. T4 PNK , NEB , Cat#M0201S.

    Article Title: Functional chromatin signatures premark future lineage-specific enhancers.
    Article Snippet: .. DpnII was deactivated by (65◦C, 20 min, 750 rpm), and ligation of DNA ends between the cross-linked DNA fragments was performed in T4 ligation buffer (NEB, B0202), ATP (NEB, P0756S), 10% Triton X-100, 20mg/mL BSA and T4 DNA Ligase (NEB, M0202) ON at 16◦C (gently rocking) followed by 30min at RT. ..

    Article Title: Nonsense-mediated mRNA decay inhibition reshapes the cancer immunopeptidome.
    Article Snippet: Briefly, pLentiCRISPRv2 backbone (Addgene #52961)141 was digested with BsmBI (ThermoFisher Scientific) and dephosphorylated with FastAP Thermosensitive Alkaline Phosphatase (ThermoFisher Scientific). .. Oligonucleotides encoding each sgRNAs with pLentiCRISPRv2compatible overhangs were phosphorylated with T4 Polynucleotide Kinase (New England Biolabs) using T4 ligation buffer (New England Biolabs) and annealed as follows: 37 ◦C for 30 minutes, 95 ◦C for 5 minutes, followed by cooling down to 25 ◦C at 5 ◦C/minute. .. Annealed oligos were diluted 1:200 in water and ligated with Quick Ligase (New England Biolabs) into the digested vector.

    Article Title: Bidirectional CRISPR screens decode a GLIS3-dependent fibrotic cell circuit
    Article Snippet: .. Oligos were annealed and phosphorylated using T4 ligation buffer (New England Biolabs, #M0202L) and T4 PNK (New England Biolabs, #M0201L). .. Esp3i-digested (Thermo Fisher Scientific, #FD0454) pXPR_003 or pXPR_502 for CRISPRko or CRISPRa, respectively, were then ligated with annealed oligos using quick ligase (New England Biolabs, #M2200L).

    DNA Purification:

    Article Title: WAVE2 and REST/NRSF Regulate Clustered Gene Expression by Maintaining Heterochromatin Organization
    Article Snippet: Chromatin was digested with 8 μl of Dpn II (NEB, MA, USA) at 37°C overnight and inactivated at 65°C for 20 min with shaking at 900 rpm. .. The nuclei were pelleted (1,000 × g, 1 min) and proximity ligation was performed in 100 μl of T4 ligation buffer (NEB, MA, USA) containing 2 μl of T4 DNA ligase at 16°C for 24 h. Proteinase K was added for reverse crosslinking (65°C, 4 h), followed by DNA purification via phenol-chloroform extraction and ethanol precipitation. ..

    Extraction:

    Article Title: WAVE2 and REST/NRSF Regulate Clustered Gene Expression by Maintaining Heterochromatin Organization
    Article Snippet: Chromatin was digested with 8 μl of Dpn II (NEB, MA, USA) at 37°C overnight and inactivated at 65°C for 20 min with shaking at 900 rpm. .. The nuclei were pelleted (1,000 × g, 1 min) and proximity ligation was performed in 100 μl of T4 ligation buffer (NEB, MA, USA) containing 2 μl of T4 DNA ligase at 16°C for 24 h. Proteinase K was added for reverse crosslinking (65°C, 4 h), followed by DNA purification via phenol-chloroform extraction and ethanol precipitation. ..

    Ethanol Precipitation:

    Article Title: WAVE2 and REST/NRSF Regulate Clustered Gene Expression by Maintaining Heterochromatin Organization
    Article Snippet: Chromatin was digested with 8 μl of Dpn II (NEB, MA, USA) at 37°C overnight and inactivated at 65°C for 20 min with shaking at 900 rpm. .. The nuclei were pelleted (1,000 × g, 1 min) and proximity ligation was performed in 100 μl of T4 ligation buffer (NEB, MA, USA) containing 2 μl of T4 DNA ligase at 16°C for 24 h. Proteinase K was added for reverse crosslinking (65°C, 4 h), followed by DNA purification via phenol-chloroform extraction and ethanol precipitation. ..

    Agarose Gel Electrophoresis:

    Article Title: Complementary constraints in germ and immune cells shape evolution of gene regulation and phenotype
    Article Snippet: Briefly, plasmid was digested with BsmBI-v2 (NEB, R0580) at 55°C for 1 hour. .. Digestion was separated on 1% agarose gel and band was extracted using QIAquick Gel Extraction Kit (28704, Qiagen) according to manufacturer instructions. sgRNA oligos were phosphorylated and annealed using T4 PNK (NEB, M0201S) and T4 Ligation Buffer (NEB, B0202S). .. Oligos were diluted 1:100 and ligated with digested lentiCRISPR v2 plasmid using T4 Ligase (NEB, M0202S) for 1 hour at room temperature.

    Gel Extraction:

    Article Title: Complementary constraints in germ and immune cells shape evolution of gene regulation and phenotype
    Article Snippet: Briefly, plasmid was digested with BsmBI-v2 (NEB, R0580) at 55°C for 1 hour. .. Digestion was separated on 1% agarose gel and band was extracted using QIAquick Gel Extraction Kit (28704, Qiagen) according to manufacturer instructions. sgRNA oligos were phosphorylated and annealed using T4 PNK (NEB, M0201S) and T4 Ligation Buffer (NEB, B0202S). .. Oligos were diluted 1:100 and ligated with digested lentiCRISPR v2 plasmid using T4 Ligase (NEB, M0202S) for 1 hour at room temperature.

    Purification:

    Article Title: CHAMP1 is an essential regulator for human myoblast fusion and muscle development
    Article Snippet: Samples were digested with 1 μl NlaIII (NEB, R0125L) at 37 °C for 1 h, purified with 0.9X SPRI beads (Beckman, B23319 ), and dissolved in 80 μl 10 mM Tris-HCl. .. DNA was diluted to 1 ng/μl and circularized in T4 ligation buffer with T4 DNA ligase (400 U/μl, NEB, M0202S) for ≥2 h at room temperature, then purified with DNA Clean & Concentrator kit (Zymo, D4013) and eluted in 16 μl H2O. .. For PmeI digestion and PCR, 14 μl DNA was incubated with 1.7 μl 10X CutSmart buffer and 1.3 μl PmeI at 37 °C for 1 h, followed by PCR with 16 μl 5X Q5 buffer, 1.6 μl 10 mM dNTPs, 1.6 μl Nextera-pcr-i7–10-L primer, 1.6 μl NEB primer i501 (both 10 μM), 0.8 μl Q5 polymerase (NEB, M0491L), and 58.4 μl H2O using the following program: 72 °C for 5 min, 98 °C for 30 s; then 11 cycles of 98 °C for 10 s, 59 °C for 30 s, 72 °C for 45 s; followed by 72 °C for 5 min and hold at 4 °C.

    Synthesized:

    Article Title: A critical signaling role for diacylglycerol in phagocytosis of M. tuberculosis
    Article Snippet: Digested plasmids were purified by gel electrophoresis and extraction with a Monarch gel extraction kit (New England Biolabs, product T1020). .. Complementary DNA oligonucleotides for the gRNA sequences were synthesized by Azenta and were annealed and phosphorylated using T4 PNK (New England Biolabs, product M0236S) and T4 ligation buffer (New England Biolabs, product B0202S) . .. The digested plasmid and annealed oligos were ligated overnight at room temperature in the presence of T4 ligase (New England Biolabs, product M0202S) and T4 ligation buffer.



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